Dear Hitch,
I hope these examples are enough to show the structure of Rob's book and how that structure appears in the editing.
I am artistically challenged, so I hope my drawing is adequate.
Some things to note:
Definitions, theorems, examples, and paragraphs are blocks that can appear in various places in a subsection. The outermost box for those blocks are shown with a little "tab" in the upper-right corner, indicating that the whole thing can be moved as a unit.
Sections and subsections have a title and introductory text. Those can't be moved around (not in the current interface anyway), so their outermost box does not have a tab.
This example shows all paragraphs as their own block, which can be moved around independently. Really there should be a way to group paragraphs into a "text block" which can be moved as a unit.
Note that Theorem, Example, and Definition have optional components: preamble and postscript. When you add one of those blocks, there is no empty box for the optional components.
An example of a preamble is in the Definition NM in the first PDF file.
There needs to be some way to show that one can add text to those components. Maybe a thin line appears when you hover, and clicking on it expands into a box.
Regards, David